Links on Ageing and Computational Biology
The links below are a selection of resources we think are potentially useful for applying computational, genomic, and phylogenetic approaches to ageing. If you think a certain link should be included, please let us know.
Major Databases and Resources
Biomolecular Interaction Network Database (BIND)
European Bioinformatics Institute
Human Protein Reference Database
KEGG: Kyoto Encyclopedia of Genes and Genomes
National Center for Biotechnology Information (NCBI), including Entrez, Entrez Gene, OMIM, dbSNP, PubMed, RefSeq, and UniGene.
Gerontology Databases
Baltimore Longitudinal Study of Aging
Longevity Consortium, Longevity Candidate Loci.
SAGE KE Genes/Interventions Database
Computational Biology Tools
DAVID, Functional Annotation Bioinformatics Microarray Analysis
InterViewer, for visualization and analysis of protein-protein interactions.
MEGA - Molecular Evolutionary Genetics Analysis
Mesquite; software for evolutionary biology, including PDAP:PDTree for calculating phylogenetic independent contrasts.
OSPREY, network visualization system.
Computer Science and Software
The Apache Software Foundation
Comprehensive Perl Archive Network (CPAN)
Digital Mars C, C++ and D Compilers
O'Reilly Network, including the Alphabetical Directory of Linux Commands.
The R Project for Statistical Computing.
Comparative Biology
Integrated Taxonomic Information System