GenAge entry for LMNA (Homo sapiens)

Entry selected based on evidence directly linking the gene product to ageing in humans

Gene name (HAGRID: 14)

HGNC symbol: LMNA
Aliases: HGPS; LMN1; CMD1A; LGMD1B; PRO1; LMNL1
Common name: lamin A/C

Potential relevance to the human ageing process

Main reason for selection

Entry selected based on evidence directly linking the gene product to ageing in humans

Description

LMNA encodes both lamin A and C (lamin A/C), two components of the lamina, a layer of the inner nuclear membrane that may interact with chromatin [174]. Hutchinson-Gilford's progeroid syndrome, caused by a mutation in LMNA, is characterized by features resembling accelerated ageing [17]. Cells from Hutchinson-Gilford's progeroid syndrome patients are characterised by accumulation of abnormally shaped nuclei, accumulation of DNA damage and premature senescence [4328]. LMNA mutations (such as the G608G mutation) generate more accessible splicing donor sites and lead to the production of an alternatively spliced product of LMNA called progerin, normally found in ageing cells. Progerin binds directly to lamin A/C and induces profound nuclear aberrations in human cells.

Mice Lmna mutants containing the G690G mutation, which also display an increased ratio of progerin/Lamin A, have shorter lifespan compared to the wild-type ( ~40% in heterozygous mice, and ~83% in homozygous mice), while mice with Lmna LCS, a knock-in mutation responsible for specifically not-producing progerin, display an increased lifespan (~13% in heterozygous mice and ~10% in homozygous mice) [3548]. Lamin A/C are TP53BP1 binding proteins that promote TP53BP1 nuclear retention. Lmna knockout mouse embryonic fibroblasts are deficient in TP53BP1 and are unable to carry out the NHEJ DNA repair pathway [4328]. Sustained expression of progerin in mouse adipocytes results in senescence, DNA damage, inflammation, fibrosis and lipoatrophy. The findings suggested that adipose tissue is particularly sensitive to progerin expression [4509].

In flies LamC mutations are a model of human LMNA mutations. The flies demonstrate premature ageing in adult flight muscles and have decreased levels of specific mitochondrial protein transcripts and progressive mitochondrial degradation. Several transcripts required for mitochondrial integrity and function exit the nucleus via nuclear envelop budding. Abnormal lamina organisation due to LamC mutation may prevent the egress of these RNAs [4375]. Thus, absence of LMNA may accelerate ageing due to an impaired response to DNA damage and mitochondrial dysfunction.

Overall, LMNA is one of the most promising candidates for a gene related to human ageing.

Cytogenetic information

Cytogenetic band: 1q22
Location: 156,114,670 bp to 156,140,089 bp
Orientation: Plus strand

Display region using the UCSC Genome Browser (GRCh38/hg38)

Protein information

Gene Ontology

Process:

GO:0007077; mitotic nuclear envelope disassembly
GO:0007084; mitotic nuclear envelope reassembly
GO:0030334; regulation of cell migration
GO:0030951; establishment or maintenance of microtubule cytoskeleton polarity
GO:0034504; protein localization to nucleus
GO:0035105; sterol regulatory element binding protein import into nucleus
GO:0036498; IRE1-mediated unfolded protein response
GO:0055015; ventricular cardiac muscle cell development
GO:0071456; cellular response to hypoxia
GO:0072201; negative regulation of mesenchymal cell proliferation
GO:0090201; negative regulation of release of cytochrome c from mitochondria

And 4 more GO terms

Cellular component:

GO:0005634; nucleus
GO:0005635; nuclear envelope
GO:0005638; lamin filament
GO:0005654; nucleoplasm
GO:0005737; cytoplasm
GO:0005829; cytosol
GO:0016607; nuclear speck
GO:0031012; extracellular matrix
GO:0031965; nuclear membrane

Function:

GO:0005198; structural molecule activity
GO:0005515; protein binding

Show all GO terms

Protein interactions and network

Protein-protein interacting partners in GenAge: TP53, LMNA, MYC, EGF, PARP1, RPA1, VCP, TOP2A, UBE2I, PML, PRKCA, PRKDC, XRCC6, RB1, EMD, PCMT1, LMNB1, H2AFX, CTNNB1, SIRT6, CISD2, SIRT7
STRING interaction network

Retrieve sequences for LMNA

ORF: ORF
CDS: CDS

Homologs in model organisms

Caenorhabditis elegans: lmn-1
Danio rerio: lmna
Drosophila melanogaster: LamC
Drosophila melanogaster: Lam
Mus musculus: Lmna
Rattus norvegicus: Lmna

In other databases

GenAge model organism genes

A homolog of this gene for Caenorhabditis elegans is present as lmn-1
A homolog of this gene for Mus musculus is present as Lmna

GenAge microarray genes

This gene is present as LMNA

LongevityMap

This gene is present as LMNA

CellAge

This gene is present as LMNA