GenAge Human Genes Help Human Ageing Genomic Resources Citation

GenAge entry for ERCC6 (Homo sapiens)


Gene name (HAGRID: 0092)

HGNC symbolERCC6
AliasesCKN2; CSB; RAD26
Common nameexcision repair cross-complementing rodent repair deficiency, complementation group 6

Potential relevance to the human ageing process

Main reason for selection

Entry selected based on evidence linking the gene product to a pathway or mechanism linked to ageing

Description

Also known as CSB, ERCC6 is involved in DNA repair and perhaps DNA unwinding [0506]. ERCC6-null mice show skin cancer predisposition, reduced growth, and neurologic dysfunction [1768]. Mice mutant for ERCC6 and XPA die before weaning and display some signs of premature ageing included stunted growth, neurological dysfunction, retinal degeneration, cachexia, and kyphosis [1934]. Mutations in the human ERCC6 gene cause Cockayne syndrome type B, which can be considered a segmental progeroid syndrome even though it is more severe than the Cockayne syndrome type A caused by mutations in ERCC8. If indeed Cockayne syndrome is premature ageing, it is likely ERCC6 plays a role in human ageing [0238].

Cytogenetic information

Cytogenetic band10q11.23
Location50,336,714 bp to 50,417,078 bp
OrientationMinus strand
Display region using the UCSC Genome Browser

Protein information

FunctionDNA repair, DNA condensation
Cellular locationnucleus
Expressionpre natal, CNS, immune system, germ cells, stem cells, other
Gene Ontology

GO:0006350; transcription; Process
GO:0006355; regulation of transcription, DNA-dependent; Process
GO:0007605; sensory perception of sound; Process

GO:0000166; nucleotide binding; Function
GO:0003677; DNA binding; Function
GO:0004386; helicase activity; Function
GO:0005524; ATP binding; Function
GO:0016787; hydrolase activity; Function

Protein-protein interactions

Interacting proteinsTP53, ERCC8, PARP1, ERCC5, CHEK2.
Display interactions using the IGD

Retrieve sequences for ERCC6

ORFORF
CDSCDS

Homologues in model organisms

P. troglodytesERCC6 (excision repair cross-complementing rodent repair deficiency, complementation group 6)
C. lupus familiarisERCC6 (excision repair cross-complementing rodent repair deficiency, complementation group 6)
B. taurusERCC6 (excision repair cross-complementing rodent repair deficiency, complementation group 6)
M. musculusErcc6 (excision repair cross-complementing rodent repair deficiency, complementation group 6)
R. norvegicusErcc6_predicted (excision repair cross-complementing rodent repair deficiency, complementation group 6 (predicted))
G. gallusERCC6 (excision repair cross-complementing rodent repair deficiency, complementation group 6)
D. rerioLOC795791 (hypothetical protein LOC795791)
D. rerioLOC560477 (hypothetical LOC560477)
S. pomberhp26 (SNF2 family helicase Rhp26)
S. cerevisiaeRAD26 (Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesion)
K. lactisKLLA0E22726g (mRNA gene KLLA0E22726g)
E. gossypiiAGOS_AEL065C (AEL065Cp)
M. griseaMGG_05239 (hypothetical protein)
N. crassaNCU07837.1 (hypothetical protein)
A. thalianaCHR8 (CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase)
O. sativaOs01g0102800 (hypothetical protein)
HomoloGene (6279)

Selected references

[1934] van der Pluijm et al. (2007), Impaired genome maintenance suppresses the growth hormone--insulin-like growth factor 1 axis in mice with Cockayne syndrome, PubMed
[1855] Niedernhofer et al. (2006), A new progeroid syndrome reveals that genotoxic stress suppresses the somatotroph axis, PubMed
[1797] Tuo et al. (2006), Synergic effect of polymorphisms in ERCC6 5' flanking region and complement factor H on age-related macular degeneration predisposition, PubMed
[1607] Dolle et al. (2006), Increased genomic instability is not a prerequisite for shortened lifespan in DNA repair deficient mice, PubMed
[1537] Thorslund et al. (2005), Cooperation of the Cockayne syndrome group B protein and poly(ADP-ribose) polymerase 1 in the response to oxidative stress, PubMed
[1139] Kipling et al. (2004), What can progeroid syndromes tell us about human aging?, PubMed
[0506] Licht et al. (2003), Cockayne syndrome group B cellular and biochemical functions, PubMed
[0502] Stevnsner et al. (2002), Mitochondrial repair of 8-oxoguanine is deficient in Cockayne syndrome group B, PubMed
[0505] Bradsher et al. (2002), CSB is a component of RNA Pol I transcription, PubMed
[0503] Tuo et al. (2002), The cockayne syndrome group B gene product is involved in cellular repair of 8-hydroxyadenine in DNA, PubMed
[0646] Murai et al. (2001), Early postnatal ataxia and abnormal cerebellar development in mice lacking xeroderma pigmentosum group A and Cockayne syndrome group B DNA repair genes, PubMed
[0504] Brosh et al. (1999), The ATPase domain but not the acidic region of Cockayne syndrome group B gene product is essential for DNA repair, PubMed
[1768] van der Horst et al. (1997), Defective transcription-coupled repair in Cockayne syndrome B mice is associated with skin cancer predisposition, PubMed
[0238] Pesce and Rothe (1996), The premature aging syndromes, PubMed
[0571] Habraken et al. (1996), Transcription factor TFIIH and DNA endonuclease Rad2 constitute yeast nucleotide excision repair factor 3: implications for nucleotide excision repair and Cockayne syndrome, PubMed
[0015] Henning et al. (1995), The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH, PubMed

Display PubMed References Associated with this GeneID; Search PubMed, Search Scirus, or Search Google Scholar

External links

EPD
ORF AccessionNM_000124
CDS AccessionNP_000115
OMIM609413
HPRD00596
EnsemblERCC6
Swiss-ProtERCC6_HUMAN
GeneCardsERCC6
Entrez Gene2074
UniGene
GenAtlasERCC6
InternetSearch Google


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